Genetika, oplemenjivanje bilja i sjemenarstvo
ORIGINAL SCIENTIFIC PAPER
Morphological and AFLP variation in some genotypes of Poa angustifolia
L. and Poa humilis Ehrh. ex Hoffm.
Zsuzsa Lisztes-Szabó1, Ákos Zubor2, Béla Tóthmérész3, Mária Papp4, József Prokisch2
1
Institute of Plant Sciences, University of Debrecen
Department of Food Science and Quality Assurance, University of Debrecen
3
Department of Ecology, University of Debrecen
4
Department of Botany, University of Debrecen
Address: Institute of Plant Sciences, University of Debrecen, H-4015, Debrecen, P. O. Box 36,
Hungary, (e-mail: szabozs@agr.unideb.hu)
2
Abstract
Morphological and AFLP characters of P. humilis and P. angustifolia individuals collected
from different habitats were compared after growing at the same site for three years. The
study showed that the morphological plasticity of these species is considerable and the
morphological characteristics were of only limited usefulness for taxonomic separation.
AFLP analysis showed a high degree of polymorphism within the species. These
populations of P. humilis and P. angustifolia could not be distinguished on the basis of
molecular characters. The species group demonstrates that in cases of polymorphic taxa the
genetic variability allows effective adaptation to slight environmental changes.
Keywords: morphological characters, AFLP, Poa, multivariate analysis
Introduction
Poa angustifolia and Poa humilis belong to Poa pratensis L. aggregation. Many
individuals with intermediate morphological characters can be observed. The
morphological variability of P. pratensis genotypes is demonstrated by several authors
(Bonos et al., 2000; Frenot et al., 1999; Rua, 1996; Reader and Bonser, 1993). Recently, a
PCR-based assay for plant DNA fingerprinting, AFLP, has been developed which reveals
significant levels of DNA polymorphism (Vos et al., 1995). The aim of this study is to
contrast the morphological and genetic variability of P. angustifolia and P. humilis
populations collected from East Hungary to provide additional information on the extent of
genetic divergence.
Material and methods
Plant material
Population for transplantation were collected in May 2003. The shoot clusters of 3 P.
angustifolia populations and 3 P. humilis populations were collected from the sandy, 3 P.
angustifolia populations and 3 P. humilis populations were collected from sandy loam and
3 P. angustifolia populations and 3 P. humilis populations were collected from alkaline soil
pastures in Hajdú-Bihar County, Eastern Hungary. The shoots of the 18 populations were
separated to small tiller units and planted in the Botanical Garden of University of
Debrecen in the same plot. There were 18 rows in the plot, one row for each population. A
row contained 15 tillers. The distance between tillers was about 10 cm, the width of a row
is 50 cm.
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Morphometric analysis
In May 2006, shoots were collected random from the signed shoot clusters of the original
habitats (controls) and others were also collected random from the shoots growing in the
experimental plot. We measured 20 individuals at sandy, 20 individuals sandy loam, and
20 individuals alkaline soil of both species from the original habitats and the experimental
plot, too (altogether 240 individuals). The average of 10 data of the lateral tiller leaves and
that of the spikelets were added to the given individuals.
The following characteristics of the vegetative organs were measured (numbering follows
the label of Fig. 1.): v1: height, v4: flag leaf sheath length, v5: flag leaf blade length, v6:
ligule length of the flag leaves, v7: the widest width of leaves, v8: flag leaf blade width,
v14: longest leaf blade lengths of lateral tillers. The following characteristics of the
generative organs were measured (numbering follows the label of Fig. 1.): v1: height, v4:
flag leaf sheath length, v5: flag leaf blade length, v6: ligule length of the flag leaves, v7:
the widest width of leaves, v8: flag leaf blade width, v14: longest leaf blade lengths of
lateral tillers. Morphological data were analysed by principal component analysis using the
R statistical program (R Development Core Team, 2005).
AFLP analysis
For AFLP, each sample consisted of about one leaf per plant for ten plants per population.
ZenoGene kit (ZenonBio Ltd, Szeged, Hungary) was used for DNA extraction following
manufacturer‘s instructions. After the AFLP procedure (K. Szabó et al., 2006) the final
amplified and selected PCR fragments were appeared by capillary electrophoresis with
ABI Prism 3100 Genetic Analyzer in fragment analysis mode at the Agricultural
Biotechnology Centre (Gödöllő, Hungary) using 360 mm length capillaries and POP-4 gel.
GeneScan HD-400 Rox Size was applied as standard marker. AFLP fragments were
identified by GeneScan 3.7 computer program.
For cluster analysis of AFLP data each detected band above 80 threshold limit was scored
as present (1) or absent (0) in all samples. The unweighted pair group method using
arithmetic means (UPGMA) was used and a dendrogram was constructed based on
Jaccard‘s similarity coefficient by the statistical software package SPSS 11.0 for Windows
(SPSS Inc., USA). Genetic diversity and significant differences in the populations were
estimated by the proportion of polymorphic loci. The allele frequencies and heterozygosity
were estimated based on square root of recessive genotypes. These estimates and Neigenetical distances were analysed by TFPGA (Miller and Mark, 1997).
Results and discussion
Morphometric analysis
We did not observe a sharp separation on the PCA biplot diagram based on all features of
the two species (Fig. 1). Clusters of the individuals of the two species show complete
overlap. However, the variables show unambiguously two different tendencies, depending
on whether they are vegetative (v1-v8, v14), or reproductive (v9-v13) characteristics
(except v7). Generative characteristics and the widest width of leaves (v7) are under
influence of environmental factors less than vegetative characteristics.
There was no separation based on the features of reproductive organs (Fig. 1). However,
the individuals were concentrated into two, partly overlapping groups based on the
characteristics of their vegetative organs. The first is the group of transplanted individuals
which have larger vegetative organs. The second is the group of individuals with smaller
organs which were collected from the original turf clones. An explanation for this is that in
the experimental environment the interspecific competition was suppressed as seedlings of
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other species were eliminated and the transplanted plants were able to spread and occupy
all of the available area.
The PCA results separated the transplanted and control populations of P. angustifolia into
two groups but the transplanted and control populations of P. humilis did not show such
separation (Fig. 1). The quantitative morphological characteristics of P. angustifolia
responded more sensitively to the transplantation.
Neither species nor transplanted populations were separated based on the reproductive
characters. The two species did not show differences considering the vegetative
characteristics, but the transplanted and control individuals of P. angustifolia separated
slightly.
4
V14
PCA 2
V1
V5 V2
V4
2
V3
V8
0
V6
V11
V7
-2
V10
V9
V12
V13
-4
-6
-4
-2
0
2
4
6
PCA 1
Figure 1: PCA biplot of the two species based on all variables.
(1-8, 14 vegetative, 9-13 reproductive variables.) □: transplanted P. angustifolia, ○:
transplanted P. humilis, : control P. angustifolia, : control P. humilis. v1: height, v2:
panicle length, v3: panicle width, v4: flag leaf sheath length, v5: flag leaf blade length, v6:
ligule length of the flag leaves, v7: the widest width of leaves, v8: flag leaf blade width,
v9: spikelet length, v10: upper glume length, v11: lower glume length, v12: palea length,
v13: lemma length, v14: longest leaf blade lengths of lateral tillers.
AFLP analysis
In the AFLP analysis three primer combinations were used and generated clear banding
patterns. A total of 338 DNA fragments were produced across 12 genotypes of four Poa
species (plus P. pratensis and P. compressa) with 333 fragments being polymorphic
(98.52% polymorphism) (Table 2). A representative example of the amplification products
obtained at P. angustifolia genotypes using the primer combination EcoRI-ACC+Tru1ICAG. The number of bands from each primer combinations ranged from 84 (EcoRIACC+Tru1I-CAA) to 159 (EcoRI-ACC+Tru1I-CAG). In the present study, a wide
variation in the number of polymorphic bands (83-157) and the percentages of
polymorphic bands within a primer combination (98.80-98.74 %) were observed. The
mean polymorphic rate was 98.47 %.
A presence (1) or absence (0) binary data matrix containing 333 polymorphic AFLP
fragments was used to generate the genetic similarity estimates. The Nei-genetical
distance, between 0.87 and 0.95, shows remarkable genetic variation among the studied
Poa populations. At the same time, the species of the P. pratensis group are close to each
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other, only P. compressa shows some separation. Inside the group, the similarity is the
biggest between P. pratensis and P. humilis, and the smallest between P. pratenis and P.
angustifolia.
Table 2: The number of bands and degree of polymorphism revealed by AFLP primer
combinations.
Primer combinations
EcoRI-ACC+Tru1I-CAG
EcoRI-ACC+Tru1I-CAC
EcoRI-ACC+Tru1I-CAA
Total
Total
bands
159
95
84
338
Polymorphic
bands
157
93
83
333
Polymorphism rate (%)
98.74
97.89
98.80
98.47
UPGMA clustering analysis was carried out in order to demonstrate graphically the genetic
similarities among the Poa genotypes to present a dendrogram of 338 AFLP fragments
obtained from three primer combinations at 12 Poa populations. But the populations of
different species are not separated from each other as would be expected.
The heterozygosity is bigger (25.6 %) in P. humilis than in P. angustifolia (23.4 %). The
heterozygosity and polymorphism in P. humilis populations are bigger than P. angustifolia
populations (Table 3).
Table 3: Mean heterozygosity and polymorphism rate in populations of P. angustifolia and P.
humilis.
P. humilis
P. angustifolia
Heterozygosity (%)
25.60
23.40
Polymorphism (%)
94.40
83.80
The mean theta value of 0.2581 (0.2307 lower limit and 0.2827 upper limit) does not mean
significant differences among the populations of studied species with 95% confidence
interval and 1000 bootstrap repeat.
Populations of different species were found to be genetically similar and there was a wide
range of genetic variability among populations of a species. The different leaf blade width
of the tillers of the two species is apparent, but sharp separation cannot be seen between
the two species in the clusters on the basis of AFLP markers. This questions the value of
the leaf blade width as a taxonomic character. The species level difference is ambiguous
between the four species.
The species level segregation of the two observed grass species is not supported by the
morphological features measured. Rua (1996) reported similar results, as the quantitative
morphological features did not reveal sharp statistical segregation between some Poa
species. In our study the basis of the identification was the width of the leaf blades whilst
other features, such as the length values, also used in identification keys, did not prove to
be useful.
Our previous observations suggested that the habitat adaptation, due to the habitat
variations, destroyed the sharp border in morphological features between the two species.
The results of the present study also supported that there was no phenotypic gap between
these species, based on the measured characteristics. After three years growing in the same
plot, tillers showed differences in morphological characteristics compared to individuals of
original habitats. In some cases it seems there are not correspondences between
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morphological characters and genotypes (McElroy, et al. 2002; Gillespie and Boles, 2001).
These observations are consistent with the results of our study.
The present study confirms the previous results that behind the habitat-sensitive features of
grass shoots there is high within-species genetic variability. AFLP variation of population
in Poa pratensis L. aggregation does not show species level separation between the studied
species based on the generated AFLP markers.
Our study showed that the morphological plasticity of our species was considerable, which
was related to the small scale variability of the habitats. Thus, the measured quantitative
morphological characters were not useful for taxonomic separation. There was no
difference in the usefulness of the vegetative and generative features considering for the
separation of the species.
The study of AFLP variation of populations of the two species suggests complex
population structures with high levels of introgression. The transplantation experiment
showed that, despite considerable phenotypic plasticity, the morphology is determined by
genotype (Howland et al., 1995). Poa taxa have high genetic potential for
microevolutionary development.
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