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Plant Disease • 2018 • 102:1-4 • https://doi.org/10.1094/PDIS-06-17-0831-RE Q:1 False Bean Smut Caused by Slime Mold Leandro A. N. N. Agra, Claudine D. S. Seixas, and José C. Dianese,† First and third authors: Departamento de Fitopatologia, Universidade de Brası́lia, Campus Darcy Ribeiro, Asa Norte, 70910-900 Brası́lia-DF, Brasil; and second author: Embrapa Soja, Rod. Carlos João Strass, Distrito de Warta, 86001-970, Londrina-Paraná, Brasil Abstract Identification of the “bean smut” reported in 1998 in abstracts from two conferences was later disseminated by a Plant Disease Note; citations in books, papers, and blogs; and in several official sites, including databases curated by the United States Department of Agriculture and EmbrapaBrazil. After seeing the illustration of the syndrome in 2002, the need became clear for a review of the so-called bean smut. Field collections indicated that it is common in no-till bean and soybean farming in Brazil. Our studies revealed that the “bean smut” attributed to Ustilago sp. or “Ustilago phaseoli” and, later, to “Microbotryum phaseoli” is not a real smut but is Physarum cinereum (Physaraceae, Physarales, Myxomycetes), sporulating superficially on leaves, stems, and pods of dry bean and soybean. To unravel this imbroglio, we produced detailed morphological documentation supported by molecular treatment. This will correct the spread and further incorporation of an error in the literature based upon mistaken taxonomical work related to a plant-associated nonpathogenic organism. In 1998, a disease described as “bean smut” was attributed to infection by a new Ustilago sp., “Ustilago phaseoli” (Costa and Oliveira 1998), later changed to “Microbotryum phaseoli” (Oliveira et al. 2000). Both names are illegitimate, because they did not adhere to the International Code of Botanical Nomenclature required for publication of new taxa at that time (Greuter et al. 1994, 2000). Illustrations of “bean smut” were shown by Ito et al. (2002) in a regional plant pathology meeting, which were graciously sent to the authors of this article (Fig. 1). The symptoms shown were attributed to an attack by “M. phaseoli”. Our many field collections showed that the symptoms were connected to a superficial sporulation of a fungal-like organism on stems, leaves, and pods of dry bean and soybean seedlings grown in no-till farming. Here, we show that “bean smut” is not a disease but the fruiting structure of a slime mold, Physarum cinereum (Myxomycetes, Physarales, Physaraceae) on stems, leaves, and pods of dry bean and soybean seedlings grown in no-till farming. 7001F; JEOL Ltd.). Species determination was conducted according to Poulain et al. (2011). Molecular characterization. For molecular characterization, genomic DNA was extracted following Walsh et al. (1991) as follows. In total, 10 sporocarps were placed into a 1.5-ml tube containing two metallic beads (3 mm) and 200 ml of 5% Chellex solution. The tubes were homogenized in a Bullet Blender 24 (Next Advanced) at high speed for 3 to 5 min. The samples were incubated at 65°C for 2 h and run through a vortex for 20 s. The partial small ribosomal subunit was amplified with PhF1a and PhR 2b primers (Kamono and Fukui 2006). Polymerase chain reaction (PCR) was performed using 25 ml of reaction, 0.1 ml of Invitrogen DNA Taq Polymerase Platinum, 0.75 ml of MgCl2,, 2.0 ml of dNTP, 14.65 ml of MilliQ H2O, 1 ml each of primer, and 3 ml of template DNA. Amplifications began with an initial step at 94°C for 5 min and 33 cycles of 94°C for 1 min, 58°C for 1 min, and 72°C for 1 min (Ko Ko et al. 2009). Amplicons were visualized on a 1.5% agarose gel stained with ethidium bromide. The PCR products were purified using Exo-SAP according to manufacturer’s instructions and sequenced at the Universidade Católica de Brası́lia. Sequences obtained were deposited and compared in the GenBank database (http://www.ncbi.nlm.nih.gov/). Material and Methods In 2015, multiple samples of dry bean and soybean were collected in areas where these crops were cultivated under no-till farming. All plant samples showed symptoms identical to those of Figure 1. A number of representative specimens were deposited in the Mycological Collection of Herbarium UB under the following access numbers: UB-Mycol. Coll. 23.241, UB-Mycol. Coll. 23.242, and UB-Mycol. 23.243. Morphological characterization. The plant-associated organism lacked the ability to penetrate and infect the host, growing as a plasmodium that sporulated on the surface of leaves, pods, and stems. Preliminary analyses were conducted using a stereomicroscope, with semipermanent slides then prepared for light-microscopic analysis. The macroscopic characteristics of the samples were photodocumented using a Leica M 205 stereomicroscope coupled with a Leica DFC 295 digital camera connected to a microcomputer. Microscopic characteristics were observed, measured, and documented on a Leica DM 2500 light microscope, using a Leica DFC 490 camera also connected to a microcomputer. In order to view the details of the spore surface and capillitial threads, electron microscopy was performed using a scanning electron microscope (JEOL model JSM† Corresponding author: J. C. Dianese; E-mail: jcarmine@gmail.com Accepted for publication 18 September 2017. © 2017 The American Phytopathological Society Results The examined materials showed abundant sporulation on stems, pods, petioles, and leaf blades of seedlings of both bean and soybean, most profusely on the adaxial surface of the leaves. Identical mature fruiting bodies were observed in all samples, which were cinereous to dark gray, becoming dark brown, and mostly containing a large number of spores. Ends of the decaying colonies showed white empty structures usually remaining on leaf and stem surface. Removal of the mass of fruiting bodies revealed intact plant epidermis, indicating that growth was essentially superficial. The plant-associated organism did not penetrate the host tissues and did not lead to tissue malformation (hyperplasia or hypertrophy), as would be expected in the case of smut fungi. All specimens examined were shown to be covered with sporangia of a species of myxomycete, both in the case of bean and soybean. The organism was identified as P. cinereum (Batsch) Pers. (Fig. 2) that shows sporangia sessile to plasmodiocarpous, irregular in shape, subglobose or elongated, 0.30–(0.38)–0.4 mm wide × 0.4–(0.75)–1.7 mm long, calcareous, white to pale gray, dehiscence apical and irregular, showing internally white lime nodes bearing a dark brown spore mass; hypothallus inconspicuous; peridium simple, membranous, coated with white lime particles; columella absent; capillitium abundant connecting angular lime nodes; spores brown to dark brown, globose, verrucose, 9–11 mm diameter. Plant Disease / nnn 2018 1 Molecular analyses of three different specimens were based on three partial 18S sequences covering more than 300 bp and BLAST analysis using GenBank data. These results confirmed the morphological diagnosis; specifically, that the organism belongs in the phylum Amoebozoa, class Myxomycetes, order Physarales, family Physaraceae, genus Physarum. The sequences were deposited in GenBank, as follows: KT898915 = UB-Mycol. Coll. 23.243 from Phaseolus vulgaris, KT922085 = UB-Mycol. Coll. 23.241 from Glycine max, and KT922086 = UB-Mycol. Coll. 23.242 from G. max. Discussion BW in print BW in print Only minor physiological changes occur in plants covered by plasmodium and fruiting bodies of myxomycetes and rarely are they considered pathogens. Physarum cinereum usually fruits on living shrubs, lawns, weeds, grasses, cultivated turfgrasses, or bryophytes (Alexopoulos et al. 1996; Couch 1995; Sharnoff 1991; Stephenson and Stempen 1994; Stephenson and Studlar 1985). Although plasmodium movement onto plant seedlings located above the substrate requires energy, sporulation on leaves improves the efficiency of aeolian dispersal of myxomycetes, as suggested by Stephenson and Studlar (1985) and Kamono et al. (2009). P. cinereum involved in the false smut syndrome requires decomposing organic matter as is present in no-till conditions, where microorganisms, mostly bacteria, multiply and serve as substrate for the growth of amoeboid and plasmodial phases that precede the formation of sporangial fruiting bodies. In this process, the plasmodium accumulates nutrients and energy, shows as a watery-white or yellow slimy growth, and climbs and covers the surface of bean or soybean seedlings before sporulating. Sometimes myxomycetes are considered plant pathogens, as by Crous et al. (2000), who cite Doidge (1924) that mentions Diachea leucopodia as the cause of a severe crown rot in Medicago sativa L., a species also treated as a pathogen on strawberry in Poland and Brazil (Domingues et al. 2012; Filipowicz 1979). In Italy, Crescenzi et al. (2015) reported losses by P. cinereum on lettuce, endive, rocket, and celery. The data herein confirm that the false smut caused by P. cinereum occurs in areas where bean and soybean are cultivated under irrigation in no-till farming in the Brazilian states of Paraná and Goiás. Although myxomycetes are known to be associated with many crops, mostly vegetables (Table 1), this is the first time it has been documented and illustrated on dry bean and soybean. In the first note on “bean smut” (Costa and Oliveira 1998), published without illustrations, the authors proposed the new species name “U. phaseoli”, ignoring the nomenclatural rules (Greuter et al. 1994). A year later, the same authors published a disease note in Plant Disease (Costa and Oliveira 1999), again without an illustration, where they reported the pathogen as Ustilago sp. “Bean smut” was described a third time in another abstract (Oliveira et al. 2000) but treated as a new Microbotryum sp., improperly designated as “M. phaseoli”, ignoring Greuter et al. (2000). Fig. 1. Physarum cinereum on dry bean seedlings. A, Sporulation on leaf surface (left) and on the stem (arrow). B, Stem sporulation. Picture of bean smut treated as caused by Microbotryum phaseoli by Dr. Margarida Ito (Fitopatologia, IAC, Campinas, Brazil, shown here with her permission. 2 Plant Disease / Vol. 102 No. 0 Fig. 2. Physarum cinereum on dry bean and soybean seedlings. A, Growth and sporulation on dry bean leaf surface. B, Growth and sporulation on dry bean pods and stems. C, Growth and sporulation on stems of dry bean. D, Growth and sporulation on soybean leaves. E, Growth and sporulation on soybean pods and stems. F, Mature sporocarps. G, Characteristic calcium carbonate nodes connected by capillitium threads (arrows) seen in a light microscope. H, Clear calcium carbonate nodes interconnected by capillitium threads seen in a scanning electron microscope. I, Spores. J and K, Spore surface as seen in scanning electron microscopy. Scale bars: A to E = 2 cm, F = 1 mm, G to I = 10 mm, and J and K = 2 mm. Table 1. Examples of Myxomycetes associated with agricultural crops Associated myxomycete speciesa Plant species (common name) Anacardium occidentale L. (cashew) Apium graveolens L. (celery) Brassica oleracea var. acephala DC (cabbage) Beta vulgaris L. var. saccharifera (sugarbeet) Camellia sinensis (L.) Kuntze (tea) Carica papaya L. (papaya) Chicorium endive L. (endive) Citrullus lanatus (Thumb.) Matsum. & Nakai (watermelon) Coffea arabica L. (coffee) Cucumis melo L. var. cimarron (muskmelon) Eryngium foetidum L. (coriander) Eruca sativa L. (rocket) Fragraria × ananassa Duchesne (strawberry) Ginkgo biloba L. (ginkgo) Gossypium hirsutum L. (cotton) Ipomea batatas (sweet potato) Lactuca sativa L. (lettuce) Manihot esculenta Crantz. (cassava) Medicavo sativa L. (alfalfa) Morus sp. (mulberry) Musa paradisiaca L. (banana) Nicotiana rustica L. (mapacho/thuoc lao) Paullinia cupana Kunth (guarana) Persea americana Mill. (avocado) Petroselinum crispum (Mill.) Fuss (parsley) Phsaeolus vulgaris L. (dry bean) Raphanus sativus L. (radish) Saccharum officinarum L. (sugar cane) Salvia officinalis L. (sage) Solanum melongea L. (eggplant) S. tuberosum L. (potato) Theobroma cacao L. (cocoa) Vignia unguiculada subsp. sesquipedalis (L.)Verdc. (yard long bean) Vitis L. sp. (grape) Zea mays L. (corn) bogoriense2; Physarum Diderma hemisphaericum6,19 P. cinereum4,10 Fuligo septica2 P. cinereum13 Ceratiomyxa sphaerosperma8; P. laevisporum8 Didymium iridis2; D. nigripes2; Lycogala epidendrum2; Physarella oblonga2; Physarum cinereum2; P. didermoides2; P. nutans2; Cribraria violacea19 P. cinereum10 F. septica2 D. flexuosum8; D. melanospermum8; P. cinereum12; Diachea leucopodia8; Ceratiomyxa fruticulosa8; Liceales (Licea mysorensis)8; P. luteolum8; P. leucopus8 F. gyrosa13; P. cinereum6,19 F. septica2 P. cinereum10 D. leucopodia4,13,17; Fuligo septica17; Mucilago spongiosa17; P. cinerum1,17 P. nigripodium11 P. nutans8; Didymium saturnus8 F. septica13; Stemonitis herbatica13; P. cinereum17 P. cinereum17,10; F. septica2; Diachea sp.2 Craterium leucocephalum2; Physarella oblonga2 Physarum cinereum17; Diachea leucopodia16 Didymium clavus9 P. nucleatum8; P. reniforme8; P. sessile8; Hemitrichia serpula8; Physarella oblonga2 S. herbatica14 Stemonitis sp.2 Physarum didermoides2 Diachea sp.2 Diachea leucopodia17 Physarum sp.13 C. aureum7; Physarum mutabile8; P. pusillum18; Lycogala epidendrum7; Cribraria splendens2; Arcyria cinerea2; A. denudata2; Trichia favoginea2; Craterirum leucocephalum2; P. nucleatum2; P. nutans2; Physarum cf. pezizoideum2 Diderma hemispharicum8 Arcyria insignis2; Didymium iridis2 D. quitense8 Stemonitis sp.15; Stemonitis axifera7; P. nutans7 P. cinereum3 Physarum sp.13 D. iridis17; D. saturnus8; Perichaena vermicularis17; S. herbatica8; Physarum javanicum5 a Countries Q:22 and references: 1Australia (Cook and Dubé 1989), 2Brazil (Domingues et al. 2012; Mendes et al. 1998; Silva and Bezerra 2005; Silva et al. 2008), (Peregrine 1982), 4Canada (Conners 1967), 5Colombia (Chardon and Toro 1930), 6Cuba (Urtiaga 1986), 7Dominican Republic (Ciferri 1961), 8India (Ranade et al. 2012; Sarbhoy et al. 1971), 9Israel (Binyamini 1991), 10Italy (Crescenzi et al. 2015), 11Japan (Nannenga-Bremekamp and Yamamoto 1987), 12Kenya (Nattrass 1961), 13Korea (Cho and Shin 2004; Kim et al. 2007, 2009, Lee et al. 2008), 14Malawi (Peregrine and Siddiqi 1972), 15Papua New Guinea (Shaw 1984), 16South Africa (Crous et al. 2000), 17United States of America (Farr and Rossman 2017), 18Venezuela (Urtiaga 1986), and 19West Indies (Minter et al. 2001). 3Brunei Following Costa and Oliveira (1999), the mistaken information became known in the Brazilian literature, mainly after the inclusion of “bean smut” (Ustilago sp.) in the United States Department of Agriculture Fungal Database (Farr and Rossman 2017). Citing Oliveira et al. (2000), the Embrapa Database of Fungi on Plants in Brazil (Mendes and Urben 2017) included “M. phaseoli” as the agent of “bean smut”. Thus, the mistaken report is present in important databases in the United States (Farr and Rossman 2017) and Brazil (Mendes and Urben 2017); was spread through conference abstracts (Ito et al. 2002), papers (Paula-Junior et al. 2004), book chapters (Dourado-Neto and Fancelli 2000; Vieira et al. 2006), extension booklets (Ito and Stein 2007; Posse et al. 2010; Sartorato 2003, 2007), a blog report (Ferreira 2015), websites (http://unifeijao.com.br/site2013/doencas_feijao.php? txt=7, http://www.ebah.com.br/content/ABAAABYMgAC/trabalhosobre-pragas-doencas-no-feijoeiro, http://agroready.blogspot.com. br/2010/09/doencas-fungicas-carvao.html, and https://fitopatologia1. blogspot.com.br/2010/07/revisao-de-literatura-de-feijao.html); and was cited in theses and dissertations (Costa 2007; Miranda-Filho 2010; Silva 2011). Thus, with this article, we hope to correct this misidentification and eradicate the use of the illegitimate fungal names “Ustilago phaseoli” and “Microbotryum phaseoli” in plant-pathological literature. Acknowledgments We thank M. Lobo (EMBRAPA-Arroz e Feijão) for samples collected in Goiás; J. R. Menezes for field pictures of bean showing false smut; CAPES/Ministry of Education-Brazil for a doctorate fellowship to the senior author; R. Neil Gerard Q:2 Miller for review of the manuscript and English corrections; and CNPQ/Ministry of Science, Technology and Innovation-PPBIO/Cerrado for research grant number PPBIO 457455/2012-8 to J. C. Dianese. Literature Cited Alexopoulos, C. J., Mims, C. W., and Blackwell, M. 1996. Introductory Mycology, 4th ed. Wiley, New York. Binyamini, N. 1991. Myxomycetes from Israel III. Trans. Mycol. Soc. Jpn. 32: 485-493. Chardon, C. E., and Toro, R. A. 1930. Mycological explorations of Colombia. J. Dep. Agric. P. R. 14:195-369. Cho, W. D., and Shin, H. 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Because making significant changes at the galley proof stage is expensive, please help us by limiting your changes whenever possible (for example, by only correcting errors). Please take the time to review the article carefully, including checking author names and affiliations, because any changes requested after the galley proof stage will incur a charge. Q: 2_In the Acknowledgments sections, please provide the name of the "senior author". Q: 3_For reference "Ciferri 1961", please clarify the name of the publisher and provide the location (city, country) of publication. Q: 4_For reference "Doidge 1924", the title of the journal was revised; correct as shown? If not, please clarify. Q: 5_For reference "Dourado-Neto and Fancelli 2000", please provide the location (city, country) of the publisher. Q: 6_For reference "Ito et al. 2002", please provide the full page range if the article is longer than one page. Q: 7_CrossRef reports the year should be "2008" not "2009" in reference "Kamono, Kojima, Matsumoto, Kawamura, Fukui, 2009". Q: 8_CrossRef reports the year should be "2017" not "2009" in reference "Ko Ko, Stephenson, Jeewon, Lumyong, Hyde, 2009". Q: 9_CrossRef reports the first author should be "Ko" not "Ko Ko" in reference "Ko Ko, Stephenson, Jeewon, Lumyong, Hyde, 2009". Q: 10_For reference "Minter et al. 2001", please provide the location (city) of the publisher. Q: 11_For reference "Oliveira et al. 2000", please confirm the title of the journal and provide the last page number if article is longer than one page. Q: 12_For reference "Paula-Junior et al. 2004", please spell out the name of the publisher and provide the full location (city, state, country) of the publisher. Q: 13_Reference "Peregrine and Ahmad 1982" is not cited in the text. Please add an in-text citation or delete the reference. Q: 14_For reference "Shaw 1984", please provide the location of the publisher (city, country). Q: 15_For reference "Silva 2011", please provide the full location (state, country) of publication. Q: 16_For reference "Silva and Bezerra 2005", please provide the last page number if article is longer than one page. AUTHOR QUERIES PLEASE RESOLVE ALL QUERIES 2 Q: 17_CrossRef reports the title of ref. "Silva, Ferreira, Bitencourt, 2008" should have "Estado do". The CrossRef title is Novos hospedeiros de Fuligo septica no Estado do Maranhão. Q: 18_CrossRef reports the first page should be "97" not "439" in reference "Silva, Ferreira, Bitencourt, 2008". Q: 19_For reference "Silva et al. 2008", please provide the last page number if article is longer than one page. Q: 20_CrossRef reports the year should be "2013" not "1985" in reference "Stephenson, Studlar, 1985". Q: 21_For reference "Vieira et al. 2006", please spell out the name of the publisher and provide the full location (city, state, country) of the publisher. Q: 22_The in-text citation "Peregrine 1982" is not in the reference list. Does this refer to "Peregrine and Ahmad 1982"? Please correct the citation, add the reference to the list, or delete the citation.