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29 May 2023

Berkeleyomyces basicola (black root rot)

Identity

Preferred Scientific Name
Berkeleyomyces basicola (Berk. Broome) Nel et al.
Preferred Common Name
black root rot
Other Scientific Names
Chalara elegans Nag Raj & Kendr.
Helminthosporium fragile (Sorokïn) Sacc.
Milowia nivea Massee
Thielaviopsis basicola (Berk. & Broome) Ferraris
Torula basicola Berk. & Broome
Trichocladium basicola (Berk. & Broome) Carmichael
International Common Names
English
black root rot and stubby root of chicory
blackhull of groundnut
root rot of ornamentals
specific replant disorder of plum and cherry
Spanish
enfermedad de las raices pardos
podredumbre de las raices: tabaco
podredumbre negra de las raices: tabaco
French
pied moir du pois
pourridie moir du melilot
pourridie moir du tabac
pourriture noire des racines du tabac
Local Common Names
swart peul vrot - grondbone
Germany
Schwarzbeinigkeit - Tabak
Wurzelbraeune - Klee
Wurzelbraeune - Tabak
Wurzelfaeule - Bohne
Wurzelfaeule - Lupine
Wurzelfaeule - Zierpflanzen
Wurzelfaeule - Zitrus-Saemlinge

Pictures

Berkeleyomyces basicola (black root rot); Infection on inoculated carrot disks. March 2016.
Infection
Berkeleyomyces basicola (black root rot); Infection on inoculated carrot disks. March 2016.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Berkeleyomyces basicola (black root rot); Infection on inoculated carrot disks. March 2016.
Infection
Berkeleyomyces basicola (black root rot); Infection on inoculated carrot disks. March 2016.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Berkeleyomyces basicola (black root rot); Cultures on MEA (top) & Carrot Agar (bottom).
Cultures
Berkeleyomyces basicola (black root rot); Cultures on MEA (top) & Carrot Agar (bottom).
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Cultural appearance of Berkeleyomyces basicola on TB-CEN medium. Healthy root, top.
Culture plates
Cultural appearance of Berkeleyomyces basicola on TB-CEN medium. Healthy root, top.
APS Press
Berkeleyomyces basicola (black root rot); Chlamydospores, conidia and philaides.
Chlamydospores, conidia and philaides.
Berkeleyomyces basicola (black root rot); Chlamydospores, conidia and philaides.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Berkeleyomyces basicola (black root rot); Chlamydospores and secondary chlamydospores at 20x magnification.
Chlamydospores
Berkeleyomyces basicola (black root rot); Chlamydospores and secondary chlamydospores at 20x magnification.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Berkeleyomyces basicola (black root rot); Conidia and secondary chlamydospores at 40x magnification.
Conidia and secondary chlamydospores
Berkeleyomyces basicola (black root rot); Conidia and secondary chlamydospores at 40x magnification.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
Berkeleyomyces basicola (black root rot); Chlamydospores on MEA through stereomicroscope.
Chlamydospores
Berkeleyomyces basicola (black root rot); Chlamydospores on MEA through stereomicroscope.
©Wilma Nel - Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria
1. Black root rot on cotton. 2. Healthy plant.
Black root rot on cotton
1. Black root rot on cotton. 2. Healthy plant.
APS Press
1. Black root rot on Poinsetta. 2. Healthy plant.
Black root rot symptoms on Poinsettia
1. Black root rot on Poinsetta. 2. Healthy plant.
APS Press
Berkeleyomyces basicola (black root rot); Chains of chlamydospores.
Chlamydospores
Berkeleyomyces basicola (black root rot); Chains of chlamydospores.
APS Press
Berkeleyomyces basicola (black root rot); Phialide, endoconidia, and chlamydospores.
Phialide, endoconidia, chlamydospores
Berkeleyomyces basicola (black root rot); Phialide, endoconidia, and chlamydospores.
APS Press
Cross-section of cotton root with black root rot. Cortical cell death, Chlamydospores.
Black root rot symptoms
Cross-section of cotton root with black root rot. Cortical cell death, Chlamydospores.
APS Press

Distribution

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Host Plants and Other Plants Affected

HostHost statusReferences
Acalypha (Copperleaf)Wild host
Villiers (1987)
AlliumOther
Yarwood (1981)
Amaranthus retroflexus (redroot pigweed)Wild host
Gayed (1972)
Antirrhinum majus (snapdragon)Other
Leahy (1998)
Apium graveolens (celery)Other
Aderhold (1905)
Arachis hypogaea (groundnut)Main
Johnson (1916), Cilliers (2001)
Armoracia rusticana (horseradish)Other
Sorokin (1876), Williamson-Benavides and Dhingra (2021)
AsterOther
Massee (1912)
Astragalus sinicus (chinese clover)Wild host
Johnson (1916)
Atropa belladonna (deadly nightshade)Wild host
Middleton (1943)
Begonia perflorensMain
Johnson (1916)
Begonia rubraMain
Selby (1896)
Begonia tuberhybridaMain
Aderhold (1905)
Beta vulgaris (beetroot)Other
Aderhold (1905)
Betula pendula (common silver birch)Other
Nel et al. (2018a)
Blysmus compressusOther
Massee (1884)
Brassica oleracea (cabbages, cauliflowers)Other
Yarwood (1981)
Brassica oleracea var. italica (broccoli)Other
Yarwood (1981)
Buxus sempervirens suffruticosaOther
Wills and Lambe (1978)
Camellia japonica (camellia)Other
Baker et al. (1953)
Capsella bursa-pastoris (shepherd's purse)Wild host
Massee (1912)
Capsicum frutescens (chilli)Other
Wills and Lambe (1978)
Catalpa speciosa (hardy catalpa)Other
Selby (1896)
Catharanthus roseus (Madagascar periwinkle)Other
McGovern and Seijo (1999)
CereusOther
Granados-Montero et al. (2018)
Chenopodium album (fat hen)Wild host
Gayed (1972)
Cicer arietinum (chickpea)Main
Bowden et al. (1985)
Cichorium (chicory)Other
Prinsloo (1986)
Citrullus lanatus (watermelon)Unknown
O'Gara (1915)
CitrusMain
Tsao and Gundy (1962)
Citrus aurantiifolia (lime)Main
Tsao and Gundy (1962)
Citrus aurantium (sour orange)Main
Tsao and Gundy (1962)
Citrus ichangensis x grandisMain
Tsao and Gundy (1962)
Citrus jambhiri (rough lemon)Main
Tsao and Gundy (1962)
Citrus limon (lemon)Main
Yarwood (1981)
Citrus reticulata (mandarin)Main
Tsao and Gundy (1962)
Citrus reticulata x paradisi (tangelo)Main
Tsao and Gundy (1962)
Citrus reticulata x sinensisMain
Tsao and Gundy (1962)
Citrus sinensis (sweet orange)Main
Tsao and Gundy (1962)
Citrus sinensis x Citrus reticulataMain
Tsao and Gundy (1962)
Citrus taiwanica (nanshodaidai)Main
Tsao and Gundy (1962)
Citrus volkamerianaMain
Graham and Timmer (1991)
Clarkia elegans [Clarkia unguiculata]Other
Rieuf (1969)
Convolvulus (morning glory)Wild host
Johnson (1916)
Conyza canadensis (Canadian fleabane)Wild host
Gayed (1972)
Conyza sumatrensis (tall fleabane)Wild host
Villiers (1987)
Coptis chinensisOther
Johnson (1916)
CordylineOther
Granados-Montero et al. (2018)
Coriandrum sativum (coriander)Other
Stakvilevičienė (2003)
Crotalaria juncea (sunn hemp)Other
Rothwell (1983)
Cryptotaenia japonicaOther
Kasuyama and Tanina (2008)
Cucumis melo (melon)Main
Wang et al. (2019)
Cucumis melo var. flexuosusMain
Johnson (1916)
Cucumis sativus (cucumber)Main
Johnson (1916)
Cucurbita maxima (giant pumpkin)Main
Johnson (1916)
Cucurbita moschata (pumpkin)Main
Johnson (1916)
Cucurbita pepo (marrow)Main
Johnson (1916)
Cyclamen persicum (cyclamens)Other
Keller and Potter (1954)
Cymbalaria muralis (Kenilworth ivy)Other
Johnson (1916)
Cyperus (flatsedge)Other
Yarwood (1981)
CypripediumOther
Massee (1912)
Cytisus scoparius (Scotch broom)Wild host
Johnson (1916)
Daphne cneorumOther
Noshad et al. (2006)
Datura cornucopia [Datura metel]Wild host
Johnson (1916)
Datura ferox (fierce thornapple)Wild host
Villiers (1987)
Datura metel (Hindu datura)Wild host
Johnson (1916)
Datura stramonium (jimsonweed)Wild host
Johnson (1916)
Daucus carota (carrot)Main
Aderhold (1905)
Desmodium tortuosum (Florida beggarweed)Wild host
Johnson (1916)
DracaenaOther
Granados-Montero et al. (2018)
Elaeis guineensis (African oil palm)Other
Stover (1950)
Epipremnum aureusOther
Keller and Potter (1954)
Equisetum arvense (field horsetail)Wild host
Gayed (1972)
EucalyptusOther
Nel et al. (2018a)
Euphorbia pulcherrima (poinsettia)Main
Keller and Shanks (1955)
Eustoma grandiflorum (Lisianthus (cut flower crop))Other
Michel (2015)
Ficus carica (common fig)Other
Granados-Montero et al. (2018)
Fragaria ananassa (strawberry)Other
Williamson-Benavides and Dhingra (2021)
Fuchsia hybridsOther
Hilton (2000)
GalactiaWild host
Johnson (1916)
Geranium (cranesbill)Other
Yarwood (1981)
Gerbera jamesonii (African daisy)Main
Keller and Potter (1954)
Glycine max (soyabean)Main
Johnson (1916), Lockwood et al. (1970)
Gossypium (cotton)Main
Smith (1899), Staffeldt (1959)
Hibiscus sabdariffa (Roselle)Other
Rothwell (1983)
Ilex aquifolium (holly)Main
Lambe and Wills (1978)
Ilex aquipernyiMain
Lambe and Wills (1978)
Ilex cornuta (Chinese holly)Main
Lambe and Wills (1978)
Ilex crenata (Japanese holly)Main
Lambe and Wills (1978)
Ilex opaca (American holly)Main
Lambe and Wills (1978)
Ipomoea batatas (sweet potato)Other
Yarwood (1981)
Kalanchoe blossfeldiana (flaming katy)Other
Madriz-Ordeñan et al. (2019)
Kummerowia striata (Japanese lespedeza)Other
Johnson (1916)
Lablab purpureus (hyacinth bean)Other
Johnson (1916)
Lactuca sativa (lettuce)Other
O'Brien and Davis (1994)
Lathyrus odoratus (sweet pea)Main
Chittenden (1911)
Lens culinaris subsp. culinaris (lentil)Main
Johnson (1916)
LespedezaOther
Wills and Lambe (1978)
Linaria (Toadflax)Other
Johson (1916)
Linum usitatissimum (flax)Other
McKay (1947)
Lonicera (honeysuckles)Other
Baker et al. (1953)
Lotus corniculatus (bird's-foot trefoil)Wild host
Johnson (1916)
Luffa acutangula (angled luffa)Main
Johnson (1916)
Lupinus (lupins)Main
Zopf (1891), Johnson (1916)
Malus sylvestris (crab-apple tree)Other
Yarwood (1981)
Malva neglecta (common mallow)Wild host
Gayed (1972)
Mangifera indica (mango)Other
Shukla et al. (2021)
Shukla et al. (2021)
Manihot esculenta (cassava)Other
Cedeno et al. (2016)
Medicago denticulataOther
Johnson (1916)
Medicago falcata (yellow alfalfa)Other
Wills and Lambe (1978)
Medicago lupulina (black medick)Wild host
Gayed (1972)
Medicago sativa (lucerne)Main
Burkholder (1916)
Melilotus albus (honey clover)Other
Johnson (1916)
Melilotus indicusOther
Johnson (1916)
NemesiaOther
O'Brien and Davis (1994)
Nemophila auriculataOther
Berkeley and Broome (1850)
Nemophila auritaOther
Johnson (1916)
Nemophila insignis [Nemophila menziesii]Other
Johnson (1916)
Nicotiana tabacum (tobacco)Main
Peglion (1897)
Nuttallanthus canadensisOther
Gilbert (1909)
Onobrychis (sainfoin)Other
Zopf (1891), Johnson (1916)
Ornithopus sativus (Bird's foot)Other
Johnson (1916)
Oxalis corniculata (creeping woodsorrel)Wild host
Gilbert (1909)
Paeonia suffruticosa (Tree peony)Other
Baker et al. (1953)
Panax ginseng (Asiatic ginseng)Other
Choi et al. (2016)
Panax quinquefolius (American ginseng)Other
Selby (1904)
Papaver nudicaule (Iceland poppy)Other
Johnson (1916)
Paphiopedilum (lady's slipper orchid)Wild host
Johnson (1916)
Passiflora edulis (passionfruit)Wild host
Young (1970)
Pastinaca sativa (parsnip)Wild host
Taubenhaus (1914)
Pelargonium (pelargoniums)Other
Doroszewska and Przybys (2007)
Persicaria maculosa (redshank)Wild host
Gayed (1972)
Petunia hybridaOther
Johnson (1916)
Phaseolus (beans)Main
Sattler (1936)
Phaseolus acutifolius (tepary bean)Main
Johnson (1916)
Phaseolus coccineus (runner bean)Main
Kirchner (1906)
Phaseolus vulgaris (common bean)Main
Aderhold (1905)
Phlox drummondii (Annual phlox)Other
Johnson (1916)
Phlox panoulataOther
Peterson (1967)
Physalis (Groundcherry)Other
Yarwood (1981)
Pinus pinaster (maritime pine)Other
Allen (1990)
Pinus radiata (radiata pine)Other
Allen (1990)
Pisum sativum (pea)Main
Berkeley and Broome (1850)
Plectranthus scutellarioides (coleus)Other
Granados-Montero et al. (2018)
Poncirus trifoliaOther
Tsao and Gundy (1962)
Portulaca obconicaWild host
Tiddens (1934)
Portulaca oleracea (purslane)Wild host
Johnson (1916)
Prunus armeniaca (apricot)Main
Bosshard et al. (2007)
Prunus avium (sweet cherry)Main
Hoestra (1965)
Prunus domestica (plum)Main
Sewell and Wilson (1975)
Prunus pissardii negraMain
Hoestra (1965)
Pyrus communis (European pear)Other
Yarwood (1981)
Ricinus communis (castor bean)Other
Thomas and Papavizas (1965)
Robinia pseudoacacia (black locust)Other
Johnson (1916)
Sambucus nigra (elder)Other
Michel (2009)
Schkuhria pinnataWild host
Villiers (1987)
Scorzonera hispanica (oyster plant)Other
Aderhold (1905)
Securigera varia [Coronilla varia]Other
Wills and Lambe (1978)
Senecio (Groundsel)Other
Zopf (1876), Keller and Potter (1954)
Sesamum indicum (sesame)Other
Thomas and Papavizas (1965)
Sida cordifolia (heartleaf sida (USA))Wild host
Villiers (1987)
Sinningia speciosa (gloxinia)Other
Middleton et al. (1944)
Solanum carolinense (horsenettle)Other
Johnson (1916)
Solanum lycopersicum (tomato)Other
Koike and Henderson (1998), Granados-Montero et al. (2018)
Solanum melongena (aubergine)Other
Wills and Lambe (1978)
Solanum tuberosum (potato)Other
Yarwood (1981)
Sonchus oleraceus (common sowthistle)Other
O'Brien and Davis (1994)
Stellaria media (common chickweed)Wild host
Yarwood (1981)
Strophostyles helvolaWild host
Johnson (1916)
Styrax benzoin (gum Benjamin)Other
Wyk et al. (2009)
Tectona grandis (teak)Other
Borges et al. (2014)
Tephrosia (hoary-pea)Wild host
Johnson (1916)
Trifolium hybridum (alsike clover)Main
Burkholder (1916)
Trifolium incarnatum (Crimson clover)Main
Johnson (1916)
Trifolium pratense (red clover)Main
Burkholder (1916)
Trifolium repens (white clover)Main
Gilbert (1909)
TrigonellaOther
Johnson (1916)
Triticum aestivum (wheat)Other
Pereg (2013)
Ulex europaeus (gorse)Wild host
Johnson (1916)
Ulmus americana (American elm)Other
Keller and Potter (1954)
Valerianella locusta (common cornsalad)Main
Stanghellini et al. (1990), Garibaldi et al. (2005)
Vicia faba (faba bean)Main
Johnson (1916)
Vicia villosa (hairy vetch)Main
Johnson (1916)
Vigna unguiculata (cowpea)Other
Smith (1899)
Vinca major (Big periwinkle)Main
Yarwood (1981)
Viola carnulaOther
Copes and Hendrix (1996)
Viola odorata (English violet)Other
Thaxter (1892)
Viola wittrockiana (wild pansy)Other
Johnson (1916)
Viola x wittrockianaOther
Kasuyama and Tanina (2008)
Vitis berlandieri x ripariaOther
Canter-Visscher and Linden (1972)
Vitis champiniiOther
Canter-Visscher and Linden (1972)
Vitis rupestris (sand-grape)Other
Canter-Visscher and Linden (1972)
Vitis rupestris x mourvedreOther
Canter-Visscher and Linden (1972)
Vitis solonis x othelloOther
Canter-Visscher and Linden (1972)
Wisteria floribunda (Japanese wisteria)Other
Yarwood (1981)
Xanthium strumarium (common cocklebur)Wild host
Villiers (1987)
Yucca gigantea (spineless yucca)Other
Granados-Montero et al. (2018)
ZeaOther
Yarwood (1981)

Symptoms

It is often difficult to identify plants having black root rot by above-ground symptoms. The most common symptom is stunting. With severe root damage, plants may exhibit chlorosis and wilting. A specific replant problem for cherry (Prunus) and plum (Prunus domestica) has been associated with B. basicola (Sewell and Wilson, 1975). Plants are rarely killed from black root rot. Symptoms start out as brown to black discoloured lesions on the root. Disease quickly increases until much of the root system may take on a black discolouration. The cortical tissue collapses and the epidermis and cortical tissue may slough off. Vascular invasion often does not occur and peeling back the black discoloured tissue should reveal a white, healthy vascular cylinder. Root systems may have few lateral roots or have stubby roots. Disease symptoms on some crops may extend to the stem below the soil surface. Disease identification can be easily accomplished through magnification of the root tissue to observe the presence of the chlamydospores of the pathogen, which are present within a few days of infection.

List of Symptoms/Signs

Symptom or signLife stagesSign or diagnosis
Plants/Leaves/wilting  
Plants/Leaves/yellowed or dead  
Plants/Roots/cortex with lesions  
Plants/Roots/fungal growth on surface  
Plants/Roots/necrotic streaks or lesions  
Plants/Roots/reduced root system  
Plants/Roots/reduced root system  
Plants/Roots/stubby roots  
Plants/Seeds/discolorations  
Plants/Stems/dieback  
Plants/Whole plant/damping off  
Plants/Whole plant/dwarfing  
Plants/Whole plant/early senescence  
Plants/Whole plant/plant dead; dieback  

Prevention and Control

Cultural Control

Environmental conditions are important for disease management. Soil temperatures should be favourable for the growth of the host and overwatering should be avoided to limit disease development. Generally, black root rot is more severe in soils with a pH above 5.6 and lower in more acidic conditions (pH <5.2) (Harrison and Shew, 2001). In controlled studies, herbicides have been demonstrated to increase black root rot (Lee and Lockwood, 1977; Lewis and Papavizas, 1979).
Crop rotation is important to prevent the build-up and maintenance of high soil populations of the pathogen. Anderson and Welacky (1988) in Ontario, Canada, reported soil populations were related to frequency of soyabean (Glycine max) production and frequency of tobacco (Nicotiana tabacum) and soyabean in rotation. Holtz and Weinhold (1994) in California, USA, found higher populations in soil planted for 3 or more years to cotton (Gossypium) than fields rotated to other crops (safflower (Carthamus tinctorius), wheat (Triticum aestivum) or barley (Hordeum vulgare)). Fields having crop rotations of sorghum or small grains, or fallow had less blackhull on the subsequent groundnut (Arachis hypogaea) crop than rotation of cotton or groundnut (Hsi, 1966). Weed control may be important for reductions in populations of the pathogen (Gayed, 1972; Klimova, 1979; Villiers, 1987). The pathogen can be recovered from plant species that are showing no symptoms and are not considered hosts (Wills and Lambe, 1978; Yarwood, 1981). Incorporation of hairy vetch (Vicia villosa) as a green manure reduced black root rot on cotton because of reductions in the population of the pathogen from the release of ammonia from the decomposing residue (Rothrock et al., 1995; Candole and Rothrock, 1997).

Host-Plant Resistance

Variation in susceptibility of cultivars or lines has been reported for a number of crops including cherry (Prunus) (Pepin et al., 1975), chickpea (Cicer arietinum) (Bowden et al., 1985; Bhatti and Kraft, 1992b), holly [Ilex] (Merrill et al., 1986), lettuce (Lactuca sativa) (O'Brien and Davis, 1994), pea (Pisum sativum) (Lloyd and Lockwood, 1963), soyabean (Anderson, 1984) and groundnut (Merwe et al., 1993). In tobacco, resistance is well characterized with complete single dominant gene resistance from Nicotiana debneyi and several sources of partial resistance (Clayton, 1969; Shew and Shoemaker, 1993).

Chemical Control

Due to the variable regulations around (de-)registration of pesticides, we are for the moment not including any specific chemical control recommendations. For further information, we recommend you visit the following resources:
PAN pesticide database (www.pesticideinfo.org)
Your national pesticide guide

Impact

Losses associated with this pathogen are very difficult to determine as a result of the chronic nature of the disease and no effective control practices for healthy and diseased plant comparisons. The pathogen is common in soils when susceptible crops are grown frequently (Anderson and Welacky, 1988; Meyer et al., 1989; Holtz and Weinhold, 1994; Rothrock, 1997). For tobacco in infested fields, yields following fumigation (chloropicrin + 1,3-dichloropropene) were increased 18-33% for cultivars with partial resistance and 100% for a susceptible cultivar, with no increase for fumigation with cultivars with complete resistance (Shew and Shoemaker, 1993). On cotton, lint yield increases of 160 kg or more were found to eliminate C. elegans populations following summer flooding (Devay and Garber, 1997). Bodker et al. (1993) reported that pea yields in fields infested with C. elegans were 19% lower than fields without the pathogen.

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Published online: 29 May 2023

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